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p38 Kinase crystal structure in complex with small molecule inhibitor
Crystallization Crystal Properties Matthews coefficient Solvent content 2.99 58.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.639 α = 90 b = 86.604 β = 90 c = 124.921 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 93.9 0.07 12.5 2.3 24207 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.2 19.57 22968 1236 100 0.182 0.179 0.238 RANDOM 22.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 0.31 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.454 r_dihedral_angle_4_deg 20.389 r_dihedral_angle_3_deg 14.78 r_dihedral_angle_1_deg 6.518 r_scangle_it 3.261 r_mcangle_it 3.19 r_mcbond_it 2.822 r_scbond_it 2.501 r_angle_refined_deg 1.592 r_angle_other_deg 1.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.454 r_dihedral_angle_4_deg 20.389 r_dihedral_angle_3_deg 14.78 r_dihedral_angle_1_deg 6.518 r_scangle_it 3.261 r_mcangle_it 3.19 r_mcbond_it 2.822 r_scbond_it 2.501 r_angle_refined_deg 1.592 r_angle_other_deg 1.394 r_mcbond_other 0.877 r_nbtor_refined 0.152 r_nbd_refined 0.145 r_nbd_other 0.098 r_symmetry_vdw_other 0.095 r_chiral_restr 0.094 r_xyhbond_nbd_refined 0.082 r_nbtor_other 0.077 r_symmetry_hbond_refined 0.062 r_symmetry_vdw_refined 0.045 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2834 Nucleic Acid Atoms Solvent Atoms 576 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement