1VYN
STRUCTURE AND NUCLEIC ACID BINDING OF THE DROSOPHILA ARGONAUTE2 PAZ DOMAIN
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | TRIPLE RESONANCE | 1.0-1.5 MM 15N OR 15N,13C-LABELED PROTEIN, 50 MM NA.PHOSPHATE BUFFER, 150 MM NACL, 0.2 MM DTT | 150 mM NaCl mM | 6.8 | 1 atm | 295 | ||
2 | NOESY | 1.0-1.5 MM 15N OR 15N,13C-LABELED PROTEIN, 50 MM NA.PHOSPHATE BUFFER, 150 MM NACL, 0.2 MM DTT | 150 mM NaCl mM | 6.8 | 1 atm | 295 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DRX | 600 |
3 | Bruker | DRX | 700 |
4 | Bruker | DRX | 900 |
NMR Refinement | ||
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Method | Details | Software |
MOLECULAR DYNAMICS, SIMULATED ANNEALING | THE NMR ENSEMBLE HAS BEEN REFINED IN A SHELL OF WATER MOLECULES.REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. | ARIA1.2, CNS1.1 CNS1.1 |
NMR Ensemble Information | |
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Conformer Selection Criteria | LOWEST ENERGIES |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 8 (n/a) |
Additional NMR Experimental Information | |
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Details | STRUCTURAL RESTRAINTS WERE DERIVED FROM 13C AND 15N-EDITED NOESY EXPERIMENTS, J-COUPLINGS, AND H-N RESIDUAL DIPOLAR COUPLINGS. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | ARIA1.2, CNS1.1 CNS1.1 | CNS1.1 | NILGES, BRUNGER ET AL. |
2 | structure solution | NMRVIEW | ||
3 | structure solution | ARIA/CNS |