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Crystal structure of Acyl-CoA hydrolase (NP_241664.1) from Bacillus halodurans at 1.66 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 293 0.15M Na formate, 20.00% PEG 3350, 0.033M Cl2E9, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.984 α = 90 b = 106.507 β = 90 c = 120.254 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-10-09 M MAD 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.979764,1.019943,0.979648 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 28.75 99.5 0.099 13 5.9 62701 33.53
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.75 98.5 0.553 2.8 3.5 8969
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.66 28.75 59512 3188 99.36 0.17146 0.17012 0.1812 0.19669 0.2036 RANDOM 26.825
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.4 -0.37 -2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.085 r_dihedral_angle_4_deg 18.924 r_dihedral_angle_3_deg 12.879 r_scangle_it 7.504 r_dihedral_angle_1_deg 6.613 r_scbond_it 5.79 r_mcangle_it 3.274 r_mcbond_it 2.635 r_angle_refined_deg 1.728 r_angle_other_deg 0.887
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.085 r_dihedral_angle_4_deg 18.924 r_dihedral_angle_3_deg 12.879 r_scangle_it 7.504 r_dihedral_angle_1_deg 6.613 r_scbond_it 5.79 r_mcangle_it 3.274 r_mcbond_it 2.635 r_angle_refined_deg 1.728 r_angle_other_deg 0.887 r_mcbond_other 0.691 r_nbd_refined 0.213 r_symmetry_vdw_other 0.213 r_xyhbond_nbd_refined 0.209 r_nbd_other 0.192 r_symmetry_hbond_refined 0.189 r_nbtor_refined 0.175 r_chiral_restr 0.102 r_nbtor_other 0.085 r_symmetry_vdw_refined 0.084 r_xyhbond_nbd_other 0.07 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3481 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 101
Software Software Software Name Purpose XDS data scaling SCALA data scaling SHELX model building REFMAC refinement XDS data reduction CCP4 data scaling SHELX phasing SHARP phasing autoSHARP phasing