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Crystal structure of a putative aminotransferase (tm1131) from thermotoga maritima msb8 at 1.82 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 20.0% PEG-3350, 0.2M NaFormate, 2.0mM n-Dodecyl-beta-D-maltoside, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.73 54.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.125 α = 90 b = 165.125 β = 90 c = 68.701 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-08-04 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0000,0.9796 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.82 28.41 98.2 0.054 13.8 4.8 94227 36.02
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.82 1.92 89.3 0.418 2.2 2.5 12449
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.82 28.41 89425 4716 98.08 0.18022 0.17902 0.1854 0.20341 0.209 RANDOM 40.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.16 0.32 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.714 r_dihedral_angle_4_deg 22.09 r_dihedral_angle_3_deg 12.992 r_scangle_it 7.386 r_dihedral_angle_1_deg 6.565 r_scbond_it 5.417 r_mcangle_it 2.801 r_mcbond_it 2.226 r_angle_refined_deg 1.553 r_angle_other_deg 0.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.714 r_dihedral_angle_4_deg 22.09 r_dihedral_angle_3_deg 12.992 r_scangle_it 7.386 r_dihedral_angle_1_deg 6.565 r_scbond_it 5.417 r_mcangle_it 2.801 r_mcbond_it 2.226 r_angle_refined_deg 1.553 r_angle_other_deg 0.877 r_mcbond_other 0.617 r_xyhbond_nbd_other 0.242 r_symmetry_vdw_other 0.231 r_nbd_refined 0.224 r_nbd_other 0.193 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.183 r_symmetry_hbond_refined 0.16 r_symmetry_vdw_refined 0.135 r_chiral_restr 0.092 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6535 Nucleic Acid Atoms Solvent Atoms 353 Heterogen Atoms 148
Software Software Software Name Purpose XDSauto data collection SCALA data scaling SHELX model building SHARP phasing REFMAC refinement XDS data reduction CCP4 data scaling SHELX phasing