1VL7

Crystal structure of a putative heme oxygenase (alr5027) from nostoc sp. pcc 7120 at 1.50 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION,SITTING DROP,NANODROP2930.04M Tris_base, 0.06M Tris Cl, 23% PEG MME 5000 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.243.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.001α = 90
b = 100.326β = 90
c = 47.667γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC2004-04-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.543.0599.640.04830.314.685071425.18
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5597.620.681.63.884884

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1g761.543.0548092257099.530.155890.154430.18276RANDOM23.707
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.130.97-1.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.066
r_dihedral_angle_4_deg19.922
r_dihedral_angle_3_deg12.654
r_dihedral_angle_1_deg6.672
r_scangle_it6.555
r_scbond_it4.724
r_mcangle_it3.07
r_mcbond_it2.468
r_angle_refined_deg1.749
r_angle_other_deg0.874
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.066
r_dihedral_angle_4_deg19.922
r_dihedral_angle_3_deg12.654
r_dihedral_angle_1_deg6.672
r_scangle_it6.555
r_scbond_it4.724
r_mcangle_it3.07
r_mcbond_it2.468
r_angle_refined_deg1.749
r_angle_other_deg0.874
r_mcbond_other0.579
r_symmetry_vdw_refined0.223
r_nbd_refined0.22
r_nbd_other0.189
r_symmetry_vdw_other0.185
r_symmetry_hbond_refined0.183
r_xyhbond_nbd_refined0.144
r_chiral_restr0.112
r_nbtor_other0.087
r_bond_refined_d0.018
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2139
Nucleic Acid Atoms
Solvent Atoms269
Heterogen Atoms32

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement