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Crystal structure of N-acetyl-gamma-glutamyl-phosphate reductase (TM1782) from Thermotoga maritima at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 295 13.50% PEG 3350, 0.50M (NH4)formate , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 295K 2 VAPOR DIFFUSION,SITTING DROP,NANODROP 295 13.50M (NH4)formate, 0.50% PEG 3350 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.28 46.17 2.31 46.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.098 α = 90 b = 92.103 β = 112.76 c = 100.88 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-09-20 M MAD 2 1 100
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9794, 0.9795, 1.0000 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.46 0.055 18.91 3.96 131126 37.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 95.79 0.507 2.12 2.85 8413
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 46.51 124606 6565 98.12 0.17942 0.17766 0.19 0.21182 0.221 RANDOM 34.956
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.68 3.77 -1.52 0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.361 r_dihedral_angle_4_deg 19.618 r_dihedral_angle_3_deg 14.159 r_scangle_it 7.14 r_dihedral_angle_1_deg 6.477 r_scbond_it 5.286 r_mcangle_it 3.248 r_mcbond_it 2.384 r_angle_refined_deg 1.515 r_angle_other_deg 0.844
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.361 r_dihedral_angle_4_deg 19.618 r_dihedral_angle_3_deg 14.159 r_scangle_it 7.14 r_dihedral_angle_1_deg 6.477 r_scbond_it 5.286 r_mcangle_it 3.248 r_mcbond_it 2.384 r_angle_refined_deg 1.515 r_angle_other_deg 0.844 r_mcbond_other 0.651 r_symmetry_vdw_other 0.237 r_nbd_refined 0.207 r_nbd_other 0.181 r_xyhbond_nbd_refined 0.149 r_symmetry_hbond_refined 0.144 r_symmetry_vdw_refined 0.096 r_chiral_restr 0.092 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10513 Nucleic Acid Atoms Solvent Atoms 756 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing autoSHARP phasing REFMAC refinement