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Crystal structure of 4-nitrophenylphosphatase (TM1742) from Thermotoga maritima at 2.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 6.5 273 2M sodium chloride, 0.1M MES pH 6.5, 0.1M sodium dihydrogen phosphate, 0.1M potassium dihydrogen phosphate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 5.35 76.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.998 α = 90 b = 93.998 β = 90 c = 160.365 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-05-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9797, 0.9999, 0.9799 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 94 100 0.072 14.5 4.6 28916 57.98
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 100 0.537 2.3 4.8 2087
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 51.17 27354 1485 99.92 0.1653 0.16381 0.1646 0.19427 0.1919 RANDOM 44.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.56 1.56 -3.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.945 r_dihedral_angle_3_deg 14.025 r_dihedral_angle_4_deg 13.771 r_scangle_it 8.85 r_scbond_it 6.486 r_dihedral_angle_1_deg 5.828 r_mcangle_it 3.092 r_mcbond_it 2.08 r_angle_refined_deg 1.427 r_nbd_refined 0.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.945 r_dihedral_angle_3_deg 14.025 r_dihedral_angle_4_deg 13.771 r_scangle_it 8.85 r_scbond_it 6.486 r_dihedral_angle_1_deg 5.828 r_mcangle_it 3.092 r_mcbond_it 2.08 r_angle_refined_deg 1.427 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.145 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.093 r_symmetry_hbond_refined 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2030 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 3
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing autoSHARP phasing REFMAC refinement CCP4 data scaling