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Crystal structure of a putative zn-dependent hydrolase of the metallo-beta-lactamase superfamily (tm0207) from thermotoga maritima at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 5 277 20% PEG-6000, 0.1M citric acid pH 5.0, 1M LiCl, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 49.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.147 α = 73.66 b = 45.723 β = 89.25 c = 63.491 γ = 64.96
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD APS-1 water cooled, sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror 2002-10-26 M MAD 2 1 x-ray 100 CCD ADSC QUANTUM 315 2002-12-02 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM 2 SYNCHROTRON SSRL BEAMLINE BL9-1 0.979148, 0.898403 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 50 93.6 0.079 10.38 2.48 26349 40.21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2 2.07 73.47 0.441 2.03 2.19 2099
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 38.91 25012 1319 93.38 0.18053 0.1784 0.1896 0.21993 0.2277 RANDOM 25.677
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.97 0.19 0.97 -0.92 0.75 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.86 r_dihedral_angle_3_deg 14.217 r_dihedral_angle_4_deg 11.889 r_scangle_it 8.672 r_dihedral_angle_1_deg 6.189 r_scbond_it 5.902 r_mcangle_it 3.821 r_mcbond_it 2.785 r_angle_refined_deg 1.458 r_angle_other_deg 0.754
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.86 r_dihedral_angle_3_deg 14.217 r_dihedral_angle_4_deg 11.889 r_scangle_it 8.672 r_dihedral_angle_1_deg 6.189 r_scbond_it 5.902 r_mcangle_it 3.821 r_mcbond_it 2.785 r_angle_refined_deg 1.458 r_angle_other_deg 0.754 r_mcbond_other 0.664 r_symmetry_hbond_refined 0.283 r_symmetry_vdw_refined 0.267 r_nbd_refined 0.21 r_symmetry_vdw_other 0.196 r_xyhbond_nbd_refined 0.183 r_nbd_other 0.176 r_nbtor_other 0.085 r_chiral_restr 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2966 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALEPACK data scaling SOLVE phasing RESOLVE model building REFMAC refinement RESOLVE phasing