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Crystal structure of pyridoxamine kinase
Crystallization Crystal Properties Matthews coefficient Solvent content 2.25 45.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.383 α = 90 b = 92.592 β = 99.42 c = 122.237 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARRESEARCH MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 32-ID 0.9795, 0.9641 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 43.03 98.9 0.182 7.4 7.2 83507 83507
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.06 92.8 0.01224 1.3 5.1
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION Se-Met MAD phasing 1.96 43.03 83506 4167 0.198 0.1887 0.256 0.2367 26.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.776 -0.168 0.41 0.311
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 3.951 p_scbond_it 2.89 p_planar_tor 2.565 p_mcangle_it 2.515 p_angle_d 2.195 p_mcbond_it 1.535 p_chiral_restr 0.136 p_bond_d 0.012 p_plane_restr 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8794 Nucleic Acid Atoms Solvent Atoms 923 Heterogen Atoms 28
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling TRUNCATE data reduction REFMAC refinement CCP4 data scaling TRUNCATE data scaling