☰ Navigation Tabs
Yeast Myo3 SH3 domain, triclinic crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 sodium citrate, glycerol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.8 α = 60.7 b = 48.75 β = 70.74 c = 48.84 γ = 70.6
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8115 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 20 96.7 0.106 7.1 2.1 6221 6221 -3 -3 33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 96.8 0.406 2.5 2.1 609
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1RUW 2.9 20 -3 6220 6220 311 97.69 0.23831 0.23831 0.23625 0.24 0.28017 0.2765 RANDOM 6.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.86 -0.64 -1.53 -0.6 6.61 -2.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.844 r_angle_refined_deg 1.294 r_angle_other_deg 0.789 r_scangle_it 0.562 r_scbond_it 0.408 r_symmetry_vdw_other 0.302 r_mcangle_it 0.285 r_nbd_other 0.241 r_xyhbond_nbd_refined 0.204 r_nbd_refined 0.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.844 r_angle_refined_deg 1.294 r_angle_other_deg 0.789 r_scangle_it 0.562 r_scbond_it 0.408 r_symmetry_vdw_other 0.302 r_mcangle_it 0.285 r_nbd_other 0.241 r_xyhbond_nbd_refined 0.204 r_nbd_refined 0.178 r_symmetry_vdw_refined 0.176 r_mcbond_it 0.175 r_symmetry_hbond_refined 0.135 r_nbtor_other 0.086 r_chiral_restr 0.073 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1982 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing