☰ Navigation Tabs
anti-Lewis X Fab fragment in complex with Lewis X
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UZ6 PDB ENTRY 1UZ6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 14 % PEG 3350, 50 MM TRIS PH 8
Crystal Properties Matthews coefficient Solvent content 2.5 49.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.104 α = 95.98 b = 60.778 β = 95.41 c = 91.556 γ = 101.71
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2003-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.175 92.6 0.094 11.1 4.1 81582 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 72 0.386 2.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UZ6 1.8 91.29 77517 4064 92.9 0.21 0.2638 0.247 0.2882 RANDOM 39.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.26 -2.03 1.38 -2.1 -1.58 -2.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.081 r_dihedral_angle_4_deg 18.579 r_dihedral_angle_3_deg 17.485 r_dihedral_angle_1_deg 6.144 r_scangle_it 3.658 r_scbond_it 2.784 r_mcangle_it 1.905 r_mcbond_it 1.544 r_angle_refined_deg 1.151 r_angle_other_deg 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.081 r_dihedral_angle_4_deg 18.579 r_dihedral_angle_3_deg 17.485 r_dihedral_angle_1_deg 6.144 r_scangle_it 3.658 r_scbond_it 2.784 r_mcangle_it 1.905 r_mcbond_it 1.544 r_angle_refined_deg 1.151 r_angle_other_deg 0.67 r_symmetry_vdw_refined 0.227 r_nbd_other 0.216 r_symmetry_hbond_refined 0.208 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.181 r_symmetry_vdw_other 0.157 r_nbtor_other 0.091 r_chiral_restr 0.076 r_xyhbond_nbd_other 0.069 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6614 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing