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anti-Lewis X Fab fragment uncomplexed
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CLZ PDB ENTRY 1CLZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 26 % PEG 3350, 0.17 M AMMONIUM SULFATE, 15 % GLYCEROL, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.5 49.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.405 α = 86.48 b = 71.559 β = 71.32 c = 104.79 γ = 83.26
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2002-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 45.175 88.1 0.046 19.7 2.5 102864 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.12 38.9 0.329 2.1 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CLZ 2.05 45.18 97776 5088 100 0.198 0.2029 0.244 0.248 RANDOM 47.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.35 -0.53 1.09 4.55 -0.53 -2.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.037 r_dihedral_angle_4_deg 19.476 r_dihedral_angle_3_deg 17.675 r_dihedral_angle_1_deg 6.905 r_mcangle_it 2.009 r_scangle_it 1.779 r_mcbond_it 1.575 r_scbond_it 1.259 r_angle_refined_deg 1.144 r_angle_other_deg 0.761
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.037 r_dihedral_angle_4_deg 19.476 r_dihedral_angle_3_deg 17.675 r_dihedral_angle_1_deg 6.905 r_mcangle_it 2.009 r_scangle_it 1.779 r_mcbond_it 1.575 r_scbond_it 1.259 r_angle_refined_deg 1.144 r_angle_other_deg 0.761 r_symmetry_vdw_refined 0.209 r_nbd_refined 0.178 r_xyhbond_nbd_refined 0.175 r_nbd_other 0.169 r_symmetry_hbond_refined 0.168 r_symmetry_vdw_other 0.136 r_nbtor_other 0.085 r_chiral_restr 0.082 r_xyhbond_nbd_other 0.038 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12960 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing