1UY0

Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with glc-1,3-glc-1,4-glc-1,3-glc


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1711% PEG 6000, 2.0 M NACL, pH 7.00
Crystal Properties
Matthews coefficientSolvent content
3.362.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.55α = 90
b = 67.65β = 90
c = 85.29γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002003-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6531.799.90.03313.93.944886
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.799.90.342.23.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.6552.742597228999.90.1550.1540.177RANDOM17.28
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.950.29-1.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.196
r_scangle_it4.15
r_scbond_it2.566
r_mcangle_it1.571
r_angle_refined_deg1.374
r_mcbond_it0.863
r_angle_other_deg0.817
r_symmetry_vdw_other0.317
r_nbd_other0.271
r_symmetry_hbond_refined0.268
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.196
r_scangle_it4.15
r_scbond_it2.566
r_mcangle_it1.571
r_angle_refined_deg1.374
r_mcbond_it0.863
r_angle_other_deg0.817
r_symmetry_vdw_other0.317
r_nbd_other0.271
r_symmetry_hbond_refined0.268
r_xyhbond_nbd_refined0.248
r_nbd_refined0.202
r_metal_ion_refined0.109
r_symmetry_vdw_refined0.093
r_nbtor_other0.085
r_chiral_restr0.081
r_gen_planes_other0.021
r_gen_planes_refined0.014
r_bond_refined_d0.013
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1926
Nucleic Acid Atoms
Solvent Atoms325
Heterogen Atoms96

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
FFTphasing