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A Novel ADP- and Zinc-binding fold from function-directed in vitro evolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 USING THE HANGING-DROP VAPOR DIFFUSION TECHIQUE. 20MG/ML OF PROTEIN WAS MIXED IN EQUAL VOLUMES WITH A CRYSTALLIZATION BUFFER OF 0.1M TRIS/HCL PH 8.5, 0.2 M SODIUM CITRATE, 30% PEG 400)
Crystal Properties Matthews coefficient Solvent content 4.4 72.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.077 α = 90 b = 71.077 β = 90 c = 54.883 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BENT + TOROIDAL 2002-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 30 99.5 0.069 32 9 12124
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2 99.3 0.477 7.3 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.94 30 11530 578 99.6 0.2 0.2065 0.228 0.2258 RANDOM 24.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 0.63 1.27 -1.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.054 r_scangle_it 4.996 r_scbond_it 3.187 r_mcangle_it 2.248 r_angle_refined_deg 1.734 r_mcbond_it 1.286 r_angle_other_deg 0.964 r_symmetry_hbond_refined 0.371 r_symmetry_vdw_other 0.297 r_xyhbond_nbd_refined 0.267
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.054 r_scangle_it 4.996 r_scbond_it 3.187 r_mcangle_it 2.248 r_angle_refined_deg 1.734 r_mcbond_it 1.286 r_angle_other_deg 0.964 r_symmetry_hbond_refined 0.371 r_symmetry_vdw_other 0.297 r_xyhbond_nbd_refined 0.267 r_nbd_other 0.246 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.201 r_chiral_restr 0.108 r_nbtor_other 0.089 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 568 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing