☰ Navigation Tabs
Structure of a molybdopterin-bound cnx1g domain links molybdenum and copper metabolism
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EAV PDB ENTRY 1EAV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 3.2 M SODIUM FORMATE ANAEROBIC, pH 7.80
Crystal Properties Matthews coefficient Solvent content 2.7 50.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.034 α = 90 b = 171.034 β = 90 c = 171.034 γ = 90
Symmetry Space Group F 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 22.88 100 0.057 7.6484 7.78 28748 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 100 0.39 1.91 7.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EAV 1.6 20 27323 1429 99.9 0.165 0.164 0.191 0.206 RANDOM 12.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.115 r_dihedral_angle_1_deg 4.972 r_scbond_it 3.84 r_mcangle_it 3.174 r_mcbond_it 1.99 r_angle_refined_deg 1.509 r_angle_other_deg 1.107 r_symmetry_vdw_refined 0.331 r_symmetry_hbond_refined 0.311 r_symmetry_vdw_other 0.251
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.115 r_dihedral_angle_1_deg 4.972 r_scbond_it 3.84 r_mcangle_it 3.174 r_mcbond_it 1.99 r_angle_refined_deg 1.509 r_angle_other_deg 1.107 r_symmetry_vdw_refined 0.331 r_symmetry_hbond_refined 0.311 r_symmetry_vdw_other 0.251 r_nbd_other 0.24 r_xyhbond_nbd_refined 0.225 r_nbd_refined 0.21 r_chiral_restr 0.198 r_nbtor_other 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1187 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing