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Crystal structure of 7-Aminoactinomycin D with non-complementary DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 (NH4)2SO4, NAK TART, NA CIT, PH 5.6, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 1.79 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.586 α = 90 b = 70.975 β = 90 c = 39.453 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-06-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 1.5418,0.8110 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 99.6 0.032 11.87 1.83 10296
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 98.8 0.0896 8.71 1.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 2 20 4870 257 99.6 0.2431 0.2809 IN THIN SHELLS
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 583.29
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.205 s_similar_adp_cmpnt 0.082 s_angle_d 0.019 s_bond_d 0.006 s_anti_bump_dis_restr 0.005 s_non_zero_chiral_vol 0.004 s_similar_dist s_zero_chiral_vol s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 182 Nucleic Acid Atoms 390 Solvent Atoms 13 Heterogen Atoms
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing