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Crystal structure of a 7-Aminoactinomycin D complex with non-complementary DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 NA.CITRATE PH 5.6, NA.ACETATE,(NH4)2SO4,HANGING DROP,T 293K
Crystal Properties Matthews coefficient Solvent content 1.97 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.222 α = 90 b = 71.222 β = 90 c = 108.4 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 MARRESEARCH 2002-07-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9050,0.9196,0.9204 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 99 0.08 6.57 10.15 11527
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 93.3 0.48 5.27 9.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 2.5 20 11527 577 99 0.276 0.3211 0.3163 0.3227 IN THIN SHELLS
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2236.88
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.159 s_similar_dist 0.029 s_angle_d 0.015 s_bond_d 0.005 s_anti_bump_dis_restr 0.004 s_non_zero_chiral_vol 0.003 s_similar_adp_cmpnt 0.002 s_zero_chiral_vol s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 728 Nucleic Acid Atoms 1503 Solvent Atoms 14 Heterogen Atoms
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing