1UA5

Non-fusion GST from S. japonicum in complex with glutathione


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.5295ammonium sulfate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.3146.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.527α = 90
b = 92.527β = 90
c = 57.657γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55097.50.110.74.188688868-3-338
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.699.70.46534.1974

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.520-38851885144397.630.171820.171820.169050.22134RANDOM21.031
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.860.86-1.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.092
r_mcangle_it1.782
r_scangle_it1.672
r_angle_refined_deg1.328
r_mcbond_it1.058
r_scbond_it1.038
r_angle_other_deg0.792
r_symmetry_hbond_refined0.246
r_symmetry_vdw_other0.228
r_nbd_other0.221
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.092
r_mcangle_it1.782
r_scangle_it1.672
r_angle_refined_deg1.328
r_mcbond_it1.058
r_scbond_it1.038
r_angle_other_deg0.792
r_symmetry_hbond_refined0.246
r_symmetry_vdw_other0.228
r_nbd_other0.221
r_symmetry_vdw_refined0.21
r_nbd_refined0.196
r_xyhbond_nbd_refined0.173
r_nbtor_other0.093
r_chiral_restr0.072
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1770
Nucleic Acid Atoms
Solvent Atoms116
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
AMoREphasing