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Crystal Structure of the fatty acid/phospholipid synthesis protein PlsX from Enterococcus faecalis V583
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 Ethanol, HEPES, MgCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.56 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.362 α = 90 b = 82.423 β = 90 c = 147.237 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 mirrors 2004-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 73.52 99.4 0.127 5.4 10.6 38309 36201
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.26 2.34 94.6 0.64 2.1 6.6 3373
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.26 73.52 34335 34335 1804 99.68 0.2089 0.2089 0.20615 0.2053 0.26178 0.2614 RANDOM 30.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.53 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.944 r_dihedral_angle_4_deg 19.134 r_dihedral_angle_3_deg 18.871 r_dihedral_angle_1_deg 6.349 r_scangle_it 3.22 r_scbond_it 2.112 r_angle_refined_deg 1.443 r_mcangle_it 1.205 r_mcbond_it 0.906 r_symmetry_hbond_refined 0.228
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.944 r_dihedral_angle_4_deg 19.134 r_dihedral_angle_3_deg 18.871 r_dihedral_angle_1_deg 6.349 r_scangle_it 3.22 r_scbond_it 2.112 r_angle_refined_deg 1.443 r_mcangle_it 1.205 r_mcbond_it 0.906 r_symmetry_hbond_refined 0.228 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.11 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4972 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing