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Structure of a hexameric N-terminal domain from murine leukemia virus capsid
Crystallization Crystal Properties Matthews coefficient Solvent content 2.81 56.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.995 α = 90 b = 78.34 β = 118.86 c = 85.766 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.9779, 0.970, 0.9783 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 20 100 0.081 85390 85291 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.98 100 0.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 12 80617 80606 4242 99.99 0.21126 0.20964 0.24208 RANDOM 22.068
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 -0.17 0.32 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.854 r_scangle_it 3.999 r_dihedral_angle_1_deg 3.163 r_scbond_it 2.41 r_mcangle_it 1.591 r_angle_refined_deg 1.169 r_mcbond_it 0.83 r_symmetry_vdw_refined 0.267 r_nbd_refined 0.23 r_symmetry_hbond_refined 0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.854 r_scangle_it 3.999 r_dihedral_angle_1_deg 3.163 r_scbond_it 2.41 r_mcangle_it 1.591 r_angle_refined_deg 1.169 r_mcbond_it 0.83 r_symmetry_vdw_refined 0.267 r_nbd_refined 0.23 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6300 Nucleic Acid Atoms Solvent Atoms 431 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing