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The crystal structure of hypothetical UPF0244 protein yjjX at resolution 1.68 Angstrom
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 sodium acetate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.55 51.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.619 α = 90 b = 96.046 β = 90 c = 84.042 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD CUSTOM-MADE mirrors 2004-06-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.98020, 0.98036 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 50 92 0.057 4.6 37441 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.68 1.74 88.8 0.445 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.68 20 18747 1027 92.13 0.18377 0.18219 0.2135 0.2319 RANDOM 16.397
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 1.68 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.86 r_scangle_it 4.813 r_scbond_it 2.993 r_mcangle_it 1.747 r_angle_refined_deg 1.492 r_angle_other_deg 1.472 r_mcbond_it 0.95 r_symmetry_vdw_refined 0.681 r_symmetry_vdw_other 0.43 r_symmetry_hbond_refined 0.402
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.86 r_scangle_it 4.813 r_scbond_it 2.993 r_mcangle_it 1.747 r_angle_refined_deg 1.492 r_angle_other_deg 1.472 r_mcbond_it 0.95 r_symmetry_vdw_refined 0.681 r_symmetry_vdw_other 0.43 r_symmetry_hbond_refined 0.402 r_xyhbond_nbd_refined 0.311 r_nbd_refined 0.27 r_nbd_other 0.265 r_chiral_restr 0.09 r_nbtor_other 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1283 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing