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Crystal structure of mouse phosphoglucose isomerase in complex with erythrose 4-phosphate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other NATIVE STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 294 1.9 M ammonium sulphate, 100 mM Tris-HCl, pH 8.5 , VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.3 41.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.8 α = 90 b = 115.6 β = 100.2 c = 73.2 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors 2002-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 54 97.5 0.067 0.067 7.4 4.2 123637 123637 19.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 81.8 0.271 0.271 1.9 3 12331
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION REFINEMENT THROUGHOUT NATIVE STRUCTURE 1.7 50 118864 118664 5943 97.5 0.192 0.192 0.19 0.1915 0.215 0.2145 RANDOM 19.099
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.35 -0.37 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.421 r_scangle_it 2.177 r_scbond_it 1.325 r_angle_refined_deg 1.052 r_mcangle_it 0.757 r_mcbond_it 0.396 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.163 r_xyhbond_nbd_refined 0.119 r_symmetry_hbond_refined 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.421 r_scangle_it 2.177 r_scbond_it 1.325 r_angle_refined_deg 1.052 r_mcangle_it 0.757 r_mcbond_it 0.396 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.163 r_xyhbond_nbd_refined 0.119 r_symmetry_hbond_refined 0.105 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8814 Nucleic Acid Atoms Solvent Atoms 832 Heterogen Atoms 115
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction d*TREK data scaling