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Crystal Structure of Pyranose 2-Oxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 298 mme PEG 2000, sodium acetate, magnesium chloride, Ta6Br12, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.92 α = 90 b = 101.69 β = 90.95 c = 135.63 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.2552 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 38.3 92.6 0.113 8 3.4 232099 232099
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 62.8 0.344 2.8 2.1 23512
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 30 229734 229734 2331 92.58 0.13407 0.13407 0.13369 0.1434 0.17122 0.1766 RANDOM 12.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 0.1 -0.1 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.811 r_scangle_it 4.783 r_scbond_it 2.932 r_mcangle_it 1.922 r_angle_refined_deg 1.775 r_mcbond_it 1.094 r_angle_other_deg 0.899 r_nbd_other 0.259 r_symmetry_vdw_other 0.226 r_symmetry_hbond_refined 0.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.811 r_scangle_it 4.783 r_scbond_it 2.932 r_mcangle_it 1.922 r_angle_refined_deg 1.775 r_mcbond_it 1.094 r_angle_other_deg 0.899 r_nbd_other 0.259 r_symmetry_vdw_other 0.226 r_symmetry_hbond_refined 0.223 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.157 r_nbtor_other 0.087 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18148 Nucleic Acid Atoms Solvent Atoms 2495 Heterogen Atoms 476
Software Software Software Name Purpose REFMAC refinement XDS data scaling SOLVE phasing