1TSJ

Crystal structure of protein from Staphylococcus aureus

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	4.6	293	32% PEG4K, 0.1M Na Acetate pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
2.86	56.73

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 83.847	α = 90
b = 83.847	β = 90
c = 36.52	γ = 120

Symmetry
Space Group	P 64

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH	Vertical and Horizontal focusing Mirrors	2004-02-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 31-ID	0.979	APS	31-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	70	100	0.12		11	5871	5836		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.4	20	100

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2.6	20	4635	4422	213	99.96	0.19265	0.19265	0.18905	0.26377	RANDOM	30.518

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.64	-0.32		-0.64		0.96

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	45.967
r_dihedral_angle_3_deg	19.195
r_dihedral_angle_4_deg	17.741
r_sphericity_free	15.79
r_dihedral_angle_1_deg	8.787
r_scangle_it	7.289
r_scbond_it	5.123
r_mcangle_it	3.76
r_rigid_bond_restr	3.416
r_sphericity_bonded	3.207
r_mcbond_it	2.942
r_angle_refined_deg	2.899
r_angle_other_deg	1.252
r_mcbond_other	0.657
r_nbd_refined	0.257
r_nbd_other	0.235
r_symmetry_hbond_refined	0.193
r_xyhbond_nbd_refined	0.179
r_symmetry_vdw_other	0.173
r_chiral_restr	0.157
r_symmetry_vdw_refined	0.147
r_nbtor_other	0.118
r_xyhbond_nbd_other	0.054
r_bond_refined_d	0.05
r_gen_planes_refined	0.011
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	902
Nucleic Acid Atoms
Solvent Atoms	22
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing