1TN3

THE C-TYPE LECTIN CARBOHYDRATE RECOGNITION DOMAIN OF HUMAN TETRANECTIN


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8THE PROTEIN WAS CRYSTALLIZED BY THE HANGING DROP METHOD BY MIXING 4 MICROLITER OF A SOLUTION CONTAINING 5 MG/ML PROTEIN, 0.02 M CACL2, 0.05 M NACL, 0.10 M TRIS-HCL, PH 8.0, WITH 3 MICROLITER RESERVOIR SOLUTION CONTAINING 2.1 M AMMONIUM SULFATE, 5 % ETHANOL., vapor diffusion - hanging drop
Crystal Properties
Matthews coefficientSolvent content
2.653

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.25α = 90
b = 64.25β = 90
c = 75.8γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277IMAGE PLATEMARRESEARCH1995-05-19M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
121597.20.06211.44.71072323
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.0598.30.2213.45

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTA POSTERIORIPDB ENTRY 2MSB, ONE MONOMER2251106111061529980.2180.2180.2150.26RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
t_dihedral_angle_d17.7
t_angle_deg2.6
t_it2
t_nbd0.026
t_trig_c_planes0.017
t_bond_d0.016
t_gen_planes0.016
t_incorr_chiral_ct
t_pseud_angle
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1066
Nucleic Acid Atoms
Solvent Atoms66
Heterogen Atoms7

Software

Software
Software NamePurpose
DENZOdata reduction
CCP4data reduction
AMoREphasing
TNTrefinement
CCP4data scaling