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Crystal structure of Bovine Glycolipid transfer protein in complex with a fatty acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.6 280 PEG 8000, MES, Sodium acetate, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 280K
Crystal Properties Matthews coefficient Solvent content 2.1 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.395 α = 90 b = 34.904 β = 116.16 c = 58.168 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirrors 2003-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.804 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 20 97.1 0.067 12.16 4.1 26281 25509
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.7 95.1 0.414 3.27 3.8 3717
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.61 18.63 24231 24231 1276 97.37 0.18405 0.18405 0.18209 0.195 0.22141 0.2115 RANDOM 24.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 0.42 -0.28 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.857 r_dihedral_angle_3_deg 14.091 r_dihedral_angle_4_deg 12.297 r_dihedral_angle_1_deg 6.27 r_scangle_it 4.272 r_scbond_it 3.016 r_mcangle_it 1.8 r_angle_refined_deg 1.669 r_mcbond_it 1.667 r_angle_other_deg 0.876
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.857 r_dihedral_angle_3_deg 14.091 r_dihedral_angle_4_deg 12.297 r_dihedral_angle_1_deg 6.27 r_scangle_it 4.272 r_scbond_it 3.016 r_mcangle_it 1.8 r_angle_refined_deg 1.669 r_mcbond_it 1.667 r_angle_other_deg 0.876 r_mcbond_other 0.306 r_symmetry_vdw_other 0.267 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.217 r_nbtor_refined 0.197 r_nbd_other 0.196 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.098 r_nbtor_other 0.09 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1652 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling SOLVE phasing