1TEJ

Crystal structure of a disintegrin heterodimer at 1.9 A resolution.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6298sodium cacodylate, ammonium sulphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
4.169.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.718α = 90
b = 90.718β = 90
c = 55.477γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray273CCDENRAF-NONIUS2002-12-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.81500EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92099.90.06210.8183721837250
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.9799.80.6592.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1RMR1.919.9617734177349551000.214830.212860.25295RANDOM43.873
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.431.43-2.85
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it9.366
r_dihedral_angle_1_deg9.233
r_scbond_it6.401
r_mcangle_it4.057
r_mcbond_it2.484
r_angle_refined_deg1.408
r_symmetry_vdw_refined0.515
r_nbd_refined0.288
r_xyhbond_nbd_refined0.248
r_symmetry_hbond_refined0.248
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it9.366
r_dihedral_angle_1_deg9.233
r_scbond_it6.401
r_mcangle_it4.057
r_mcbond_it2.484
r_angle_refined_deg1.408
r_symmetry_vdw_refined0.515
r_nbd_refined0.288
r_xyhbond_nbd_refined0.248
r_symmetry_hbond_refined0.248
r_chiral_restr0.11
r_gen_planes_refined0.018
r_bond_refined_d0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms940
Nucleic Acid Atoms
Solvent Atoms161
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing