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STRUCTURE OF CONCANAVALIN A COMPLEXED TO BETA-D-GLCNAC (1,2)ALPHA-D-MAN-(1,6)[BETA-D-GLCNAC(1,2)ALPHA-D-MAN (1,6)]ALPHA-D-MAN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CNA PDB ENTRY 5CNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 POLYETHYLENE GLYCOL 15%, pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.36 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 176.5 α = 90 b = 122.8 β = 134.2 c = 124.6 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MAC Science DIP-2000 MIRRORS, MACSCIENCE 1996-10-29 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 25 97.1 0.094 4.2 53516
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT X-PLOR PDB ENTRY 5CNA 2.7 25 50737 4470 97.1 0.179 0.179 0.1741 0.219 0.2136 RANDOM 23.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_scbond_it 29.6 x_mcbond_it 28.6 x_dihedral_angle_d 26.4 x_angle_deg 1.746 x_improper_angle_d 1.439 x_bond_d 0.01 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na
RMS Deviations Key Refinement Restraint Deviation x_scbond_it 29.6 x_mcbond_it 28.6 x_dihedral_angle_d 26.4 x_angle_deg 1.746 x_improper_angle_d 1.439 x_bond_d 0.01 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcangle_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14472 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 512
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing