1T3S

Structural Analysis of the Voltage-Dependent Calcium Channel Beta Subunit Functional Core


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP9292PEG 20K, BICINE, SODIUM CHLORIDE, BETA-MERCAPTOETHANOL, MPD, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.7555.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.066α = 90
b = 163.841β = 90
c = 34.761γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.9333ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3500.04815.418271
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.387.90.314.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUTmodel built from earlier MAD data2.381.65182291729493592.790.262220.261470.27728RANDOM57.757
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.865.23-1.37
RMS Deviations
KeyRefinement Restraint Deviation
r_angle_other_deg3.506
r_scangle_it3.492
r_mcangle_it2.705
r_scbond_it2.323
r_mcbond_it1.559
r_angle_refined_deg1.536
r_dihedral_angle_1_deg1.213
r_nbd_other0.302
r_symmetry_vdw_other0.267
r_nbd_refined0.241
RMS Deviations
KeyRefinement Restraint Deviation
r_angle_other_deg3.506
r_scangle_it3.492
r_mcangle_it2.705
r_scbond_it2.323
r_mcbond_it1.559
r_angle_refined_deg1.536
r_dihedral_angle_1_deg1.213
r_nbd_other0.302
r_symmetry_vdw_other0.267
r_nbd_refined0.241
r_symmetry_vdw_refined0.167
r_xyhbond_nbd_refined0.161
r_nbtor_other0.109
r_chiral_restr0.108
r_symmetry_hbond_refined0.039
r_gen_planes_refined0.009
r_bond_refined_d0.008
r_gen_planes_other0.006
r_bond_other_d
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2282
Nucleic Acid Atoms
Solvent Atoms87
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing