1T0H

Crystal structure of the Rattus norvegicus voltage gated calcium channel beta subunit isoform 2a


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8281Tris-Cl, NaCl, PEG 4000, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystal Properties
Matthews coefficientSolvent content
2.345.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.176α = 107.34
b = 45.26β = 95.75
c = 58.701γ = 97
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-01-18MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.0199, 0.9796ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.97301000.06927.515.1924274242741131.255
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.972.0496.50.3052.452.172402

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.9755.052427422945121497.830.186930.185470.21321RANDOM23.714
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.17-0.310.32-0.41-0.40.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.165
r_scangle_it4.988
r_scbond_it2.983
r_mcangle_it1.744
r_angle_refined_deg1.48
r_mcbond_it0.911
r_angle_other_deg0.84
r_symmetry_vdw_other0.286
r_nbd_other0.24
r_nbd_refined0.212
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.165
r_scangle_it4.988
r_scbond_it2.983
r_mcangle_it1.744
r_angle_refined_deg1.48
r_mcbond_it0.911
r_angle_other_deg0.84
r_symmetry_vdw_other0.286
r_nbd_other0.24
r_nbd_refined0.212
r_symmetry_vdw_refined0.17
r_xyhbond_nbd_refined0.147
r_symmetry_hbond_refined0.104
r_nbtor_other0.088
r_chiral_restr0.085
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2228
Nucleic Acid Atoms
Solvent Atoms148
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing