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Crystal Structure of Protein Kinase A in Complex with Azepane Derivative 4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 278 LiCl, MesBisTris, methanol, MEGA-8, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.65 53.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.243 α = 90 b = 76.851 β = 90 c = 79.914 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 278 IMAGE PLATE MARRESEARCH GRAPHITE MONOCHROMATOR 2001-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 14.7 81.8 25042 25042
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.13 15.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.02 14.7 23778 23778 1264 81.67 0.183 0.183 0.181 0.227 FROM STARTING MODEL 31.896
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 1.16 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.805 r_scangle_it 3.956 r_scbond_it 2.382 r_mcangle_it 1.652 r_angle_refined_deg 1.436 r_mcbond_it 0.859 r_angle_other_deg 0.83 r_symmetry_vdw_other 0.254 r_nbd_other 0.242 r_nbd_refined 0.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.805 r_scangle_it 3.956 r_scbond_it 2.382 r_mcangle_it 1.652 r_angle_refined_deg 1.436 r_mcbond_it 0.859 r_angle_other_deg 0.83 r_symmetry_vdw_other 0.254 r_nbd_other 0.242 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.145 r_symmetry_vdw_refined 0.117 r_symmetry_hbond_refined 0.117 r_nbtor_other 0.09 r_chiral_restr 0.084 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2980 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing