1SSE

Solution structure of the oxidized form of the Yap1 redox domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY0.8 mM U-15N; U-15N & 13C.10 mM NaPhos, 20 mM NaCL, 10% D2O20 mM NaCl6.0ambient303
24D_13C/15N-separated_NOESY0.8 mM U-15N; U-15N & 13C.10 mM NaPhos, 20 mM NaCL, 10% D2O20 mM NaCl6.0ambient303
3HNCACB0.8 mM U-15N; U-15N & 13C.10 mM NaPhos, 20 mM NaCL, 10% D2O20 mM NaCl6.0ambient303
4Experiments for residual dipolar coupling measurements0.8 mM U-15N; U-15N & 13C.10 mM NaPhos, 20 mM NaCL, 10% D2O20 mM NaCl6.0ambient303
54D_13C-separated_NOESY0.8 mM U-15N & 13C.10 mM NaPhos, 20 mM NaCL, 100% D2O20 mM NaCl6.0ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
distance geometry and simulated annealingYap1-RD structures were calculated with 1103 NOE distance restraints, 54 hydrogen bond restraints, 92 dihedral angle restraints and 93 residual dipolar couplings. Residues 279-300 and 565-592 are disordered.NMRPipe
NMR Ensemble Information
Conformer Selection CriteriaStuctures with the lowest energy and no NOE or dihedral violations > 0.5 A and 5 degrees, respectively.
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsResidual dipolar couplings (DN-H and DCaH) were measured in a solution composed of PF1 phage.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2.1
2processingPIPP4.2.8
3collectionXwinNMR2.5
4refinementXPLOR-NIH2.0.6Brunger & SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE