1SSE
Solution structure of the oxidized form of the Yap1 redox domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.8 mM U-15N; U-15N & 13C. | 10 mM NaPhos, 20 mM NaCL, 10% D2O | 20 mM NaCl | 6.0 | ambient | 303 | |
2 | 4D_13C/15N-separated_NOESY | 0.8 mM U-15N; U-15N & 13C. | 10 mM NaPhos, 20 mM NaCL, 10% D2O | 20 mM NaCl | 6.0 | ambient | 303 | |
3 | HNCACB | 0.8 mM U-15N; U-15N & 13C. | 10 mM NaPhos, 20 mM NaCL, 10% D2O | 20 mM NaCl | 6.0 | ambient | 303 | |
4 | Experiments for residual dipolar coupling measurements | 0.8 mM U-15N; U-15N & 13C. | 10 mM NaPhos, 20 mM NaCL, 10% D2O | 20 mM NaCl | 6.0 | ambient | 303 | |
5 | 4D_13C-separated_NOESY | 0.8 mM U-15N & 13C. | 10 mM NaPhos, 20 mM NaCL, 100% D2O | 20 mM NaCl | 6.0 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry and simulated annealing | Yap1-RD structures were calculated with 1103 NOE distance restraints, 54 hydrogen bond restraints, 92 dihedral angle restraints and 93 residual dipolar couplings. Residues 279-300 and 565-592 are disordered. | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | Stuctures with the lowest energy and no NOE or dihedral violations > 0.5 A and 5 degrees, respectively. |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | Residual dipolar couplings (DN-H and DCaH) were measured in a solution composed of PF1 phage. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.1 | |
2 | processing | PIPP | 4.2.8 | |
3 | collection | XwinNMR | 2.5 | |
4 | refinement | XPLOR-NIH | 2.0.6 | Brunger & SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE |