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MYCOBACTERIUM TUBERCULOSIS DUTPASE COMPLEXED WITH MAGNESIUM AND DEOXYURIDINE 5'-MONOPHOSPHATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MQ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 PEG 3350, magnesium nitrate, Tris, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.52 50.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.228 α = 90 b = 77.496 β = 90 c = 93.949 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2002-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 1.10 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 80 97.9 0.07 14.8 3.5 36211 36211 19.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 98.7 0.462 2.9 3 3579
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MQ7 1.85 41.89 31243 31243 3485 95.99 0.173 0.17293 0.16931 0.20462 0.2275 RANDOM 18.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -1.88 2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.392 r_scangle_it 4.387 r_angle_refined_deg 2.716 r_scbond_it 2.62 r_mcangle_it 1.621 r_angle_other_deg 1.373 r_mcbond_it 0.989 r_symmetry_vdw_other 0.352 r_nbd_other 0.248 r_symmetry_vdw_refined 0.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.392 r_scangle_it 4.387 r_angle_refined_deg 2.716 r_scbond_it 2.62 r_mcangle_it 1.621 r_angle_other_deg 1.373 r_mcbond_it 0.989 r_symmetry_vdw_other 0.352 r_nbd_other 0.248 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.185 r_xyhbond_nbd_refined 0.172 r_metal_ion_refined 0.134 r_chiral_restr 0.122 r_symmetry_hbond_refined 0.107 r_nbtor_other 0.084 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2917 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 91
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing