1SHO

CRYSTAL STRUCTURE OF VANCOMYCIN AT ATOMIC RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.8PH 5.8
Crystal Properties
Matthews coefficientSolvent content
2.957.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 28.48α = 90
b = 28.48β = 90
c = 65.83γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray125IMAGE PLATEMARRESEARCHBENT CRYSTAL MONOCHROMATOR1995-08-29M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7BEMBL/DESY, HAMBURGBW7B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.097099.30.0582713.911867
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.091.171000.08319.76.8

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONAB INITIO1.09701186799.30.105
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
2155314.5
RMS Deviations
KeyRefinement Restraint Deviation
s_approx_iso_adps0.104
s_zero_chiral_vol0.093
s_from_restr_planes0.057
s_anti_bump_dis_restr0.041
s_bond_d0.024
s_similar_dist0.022
s_similar_adp_cmpnt0.017
s_rigid_bond_adp_cmpnt0.003
s_angle_d
s_non_zero_chiral_vol
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms160
Nucleic Acid Atoms
Solvent Atoms108
Heterogen Atoms48

Software

Software
Software NamePurpose
SHELX-96model building
SHELXL-96refinement
DENZOdata reduction
SCALEPACKdata scaling
SHELX-96phasing