1S6W

Solution Structure of hybrid white striped bass hepcidin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1DQF-COSY3.5mM hepcidin, 95% H2O, 5% D2O, pH=4.795% H2O/5% D2O04.71 atm298
22D TOCSY3.5mM hepcidin, 95% H2O, 5% D2O, pH=4.795% H2O/5% D2O04.71 atm298
32D NOESY3.5mM hepcidin, 95% H2O, 5% D2O, pH=4.795% H2O/5% D2O04.71 atm298
4E-COSY3.5mM hepcidin, 100% D2O, 10mM CD3COONa, pH=4.5100% D2O; 10mM CD3COONa pH=4.510mM CD3COONa4.51 atm298
52D NOESY3.5mM hepcidin, 100% D2O, 10mM CD3COONa, pH=4.5100% D2O; 10mM CD3COONa pH=4.510mM CD3COONa4.51 atm298
613C-HSQC3.5mM hepcidin, 95% H2O, 5% D2O, pH=4.795% H2O/5% D2O04.71 atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealing molecular dynamics torsion angle dynamicsthe structures are based on 188 NOE-derived distance constraints, 238 dihedral angle restraints, 4 distance restraintsfrom hydrogen bondsX-PLOR-NIH
NMR Ensemble Information
Conformer Selection CriteriaThe submitted conformer models are the 20 structures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model4 (closest to the average)
Additional NMR Experimental Information
Detailsthis structure was determined using standard 2D homonuclear techniques and chemical shift data was obtained using standard 2D heteronuclear techniques performed at natural abundance isotope levels
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionX-PLOR-NIH2.0.6C.D.Schwieters, J.J.Kuszewski, N.Tjandra and G.M.Clore
2data analysisNMRPipe1F.Delaglio, S.Grzesiek, G.W.Vuister, G. Zhu, J.Pfeifer and A.Bax
3collectionXwinNMR3.5bruker
4refinementX-PLOR-NIH2.0.6C.D.Schwieters, J.J.Kuszewski, N.Tjandra and G.M.Clore