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Crystal Structure analysis of the beta-propeller protein Ski8p
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 PEG4000, Sodium citrate, Ethylene glycol, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.16 42.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.555 α = 90 b = 66.791 β = 90 c = 81.459 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-07-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9789, 0.9791, 0.9724 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 0.999 21453 21439 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.154 0.988
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 19.96 2 21439 20331 1107 100 0.2529 0.25123 0.2551 0.28332 0.283 RANDOM 31.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.26 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.47 r_scangle_it 1.84 r_mcangle_it 1.154 r_angle_refined_deg 1.06 r_scbond_it 1.057 r_angle_other_deg 0.752 r_mcbond_it 0.616 r_nbd_other 0.229 r_nbd_refined 0.209 r_symmetry_vdw_other 0.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.47 r_scangle_it 1.84 r_mcangle_it 1.154 r_angle_refined_deg 1.06 r_scbond_it 1.057 r_angle_other_deg 0.752 r_mcbond_it 0.616 r_nbd_other 0.229 r_nbd_refined 0.209 r_symmetry_vdw_other 0.201 r_xyhbond_nbd_refined 0.179 r_symmetry_hbond_refined 0.156 r_symmetry_vdw_refined 0.151 r_nbtor_other 0.081 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2816 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing