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Accomodation of Mispair-Aligned N3T-Ethyl-N3T DNA Interstrand Crosslink
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 100 mM NaCl, pH 7.4 adjusted with phosphate buffer H2O, D2O 0.1 mM NaCl 7.4 normal 273 2 2D TOCSY 100 mM NaCl, pH 7.4 adjusted with phosphate buffer H2O, D2O 0.1 mM NaCl 7.4 normal 273 3 DQF-COSY 100 mM NaCl, pH 7.4 adjusted with phosphate buffer H2O, D2O 0.1 mM NaCl 7.4 normal 273
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics Felix
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 8 Conformers Submitted Total Number 1 Representative Model 8 (minimized average structure)
Additional NMR Experimental Information Details Structure Determined using standard NMR experiments.
Computation: NMR Software # Classification Version Software Name Author 1 data analysis Felix 2000 2 refinement X-PLOR 3.2 A.T. Brunger