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Alternative Splicing of Rac1 Generates Rac1b, a Self-activating GTPase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MH1 PDB ENTRY 1MH1
Crystallization Crystal Properties Matthews coefficient Solvent content 2.39 48.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.55 α = 90 b = 78.67 β = 90 c = 96.88 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 26.261 40221
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MH1 1.75 26.26 38205 2014 99.35 0.18278 0.18278 0.18081 0.203 0.21887 0.2323 RANDOM 20.973
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 0.39 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.654 r_scangle_it 4.294 r_scbond_it 2.816 r_mcangle_it 1.906 r_angle_refined_deg 1.883 r_mcbond_it 1.152 r_angle_other_deg 0.967 r_symmetry_vdw_other 0.335 r_nbd_other 0.245 r_nbd_refined 0.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.654 r_scangle_it 4.294 r_scbond_it 2.816 r_mcangle_it 1.906 r_angle_refined_deg 1.883 r_mcbond_it 1.152 r_angle_other_deg 0.967 r_symmetry_vdw_other 0.335 r_nbd_other 0.245 r_nbd_refined 0.223 r_symmetry_vdw_refined 0.222 r_xyhbond_nbd_refined 0.18 r_symmetry_hbond_refined 0.176 r_chiral_restr 0.132 r_nbtor_other 0.086 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_metal_ion_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2561 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling