1RHF

Crystal Structure of human Tyro3-D1D2

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.5	293	HEPES, sodium cacodylate, magnesium acetate, PEG2000, DTT, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
2.74	55.04

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 109.55	α = 90
b = 109.55	β = 90
c = 62.47	γ = 120

Symmetry
Space Group	P 61

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	110	IMAGE PLATE	RIGAKU RAXIS IV		2002-05-07	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU RU300	0.9766, 0.9762, 0.9252

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	100	97.8	0.043				30568

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.95	2.02	82.9		0.277

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	1.96	30	27788	2775	100	0.21286	0.20855	0.25635	RANDOM	37.269

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.38	-0.69		-1.38		2.07

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	6.814
r_scangle_it	4.82
r_scbond_it	3.053
r_mcangle_it	2.264
r_angle_refined_deg	1.402
r_mcbond_it	1.312
r_angle_other_deg	0.829
r_symmetry_hbond_refined	0.311
r_symmetry_vdw_refined	0.3
r_symmetry_vdw_other	0.272
r_nbd_other	0.245
r_xyhbond_nbd_refined	0.198
r_metal_ion_refined	0.188
r_nbd_refined	0.179
r_chiral_restr	0.086
r_nbtor_other	0.083
r_bond_refined_d	0.011
r_gen_planes_refined	0.005
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2682
Nucleic Acid Atoms
Solvent Atoms	275
Heterogen Atoms	32

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data scaling
SOLVE	phasing
RESOLVE	phasing