X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.527740% MPD, 8% PEG 5000MME, 0.2M MgCl2, 0.1M Na Acetate pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0238.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.021α = 90
b = 52.475β = 96.53
c = 96.609γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDMACSCIENCE2000-12-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID1.0542517APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7872098.40.08311.317.32308021591-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.7871.861000.2494.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1RFX1.78717.822159121591108797.740.205770.205770.203770.24494RANDOM26.408
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.23-0.01-0.470.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.811
r_dihedral_angle_3_deg13.948
r_dihedral_angle_4_deg13.693
r_dihedral_angle_1_deg6.19
r_angle_refined_deg1.844
r_scangle_it1.609
r_scbond_it1.167
r_mcangle_it0.992
r_angle_other_deg0.785
r_mcbond_it0.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.811
r_dihedral_angle_3_deg13.948
r_dihedral_angle_4_deg13.693
r_dihedral_angle_1_deg6.19
r_angle_refined_deg1.844
r_scangle_it1.609
r_scbond_it1.167
r_mcangle_it0.992
r_angle_other_deg0.785
r_mcbond_it0.66
r_symmetry_vdw_refined0.268
r_symmetry_vdw_other0.241
r_nbd_other0.202
r_nbd_refined0.2
r_symmetry_hbond_refined0.174
r_xyhbond_nbd_refined0.119
r_nbtor_other0.087
r_mcbond_other0.072
r_chiral_restr0.07
r_bond_refined_d0.008
r_bond_other_d0.007
r_gen_planes_refined0.003
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2000
Nucleic Acid Atoms
Solvent Atoms179
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement