☰ Navigation Tabs
Human GAR Tfase complex structure with 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid and substrate beta-GAR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NJS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 MPEG 5000, Sodium Acetate, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.65 73.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.171 α = 90 b = 126.171 β = 90 c = 95.389 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 9 mirrors 2002-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.954 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.101 47.67 99.8 0.064 22.9 3.66 98854 98854 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.101 2.155 99.7 0.452 2.8 3.24 4962
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1NJS 2.101 47.67 92987 92987 4692 94.09 0.24588 0.24588 0.2449 0.2452 0.26428 0.264 RANDOM 23.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 -0.3 -0.59 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.709 r_scangle_it 2.823 r_scbond_it 1.689 r_angle_refined_deg 1.251 r_mcangle_it 0.886 r_mcbond_it 0.47 r_symmetry_vdw_refined 0.204 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.133 r_symmetry_hbond_refined 0.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.709 r_scangle_it 2.823 r_scbond_it 1.689 r_angle_refined_deg 1.251 r_mcangle_it 0.886 r_mcbond_it 0.47 r_symmetry_vdw_refined 0.204 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.133 r_symmetry_hbond_refined 0.131 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6028 Nucleic Acid Atoms Solvent Atoms 511 Heterogen Atoms 188
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling AMoRE phasing REFMAC refinement HKL-2000 data reduction