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Crystal structure of the thyroid hormone receptor beta ligand binding domain in complex with a beta selective compound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 Sodium acetate, sodium cacodylate , pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.99 58.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.556 α = 90 b = 68.556 β = 90 c = 129.17 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 0.8337 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 93 6953 6953
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.07 50
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 30 6632 6632 315 93.14 0.26502 0.26502 0.26081 0.34677 RANDOM 71.972
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.52 2.76 5.52 -8.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.425 r_scangle_it 1.603 r_angle_refined_deg 1.533 r_angle_other_deg 1.041 r_scbond_it 0.98 r_mcangle_it 0.613 r_mcbond_it 0.321 r_symmetry_vdw_refined 0.288 r_symmetry_vdw_other 0.228 r_nbd_refined 0.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.425 r_scangle_it 1.603 r_angle_refined_deg 1.533 r_angle_other_deg 1.041 r_scbond_it 0.98 r_mcangle_it 0.613 r_mcbond_it 0.321 r_symmetry_vdw_refined 0.288 r_symmetry_vdw_other 0.228 r_nbd_refined 0.217 r_nbd_other 0.214 r_xyhbond_nbd_refined 0.106 r_nbtor_other 0.091 r_chiral_restr 0.07 r_bond_refined_d 0.015 r_symmetry_hbond_refined 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1887 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing