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Human Estrogen Receptor alpha Ligand-Binding Domain In Complex With GW5638
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ERT PDB ENTRY 1ERT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.7 277 Ethylene imine polymer, tri-sodium citrate, sodium chloride, yttrium chloride hexahydrate, pH 5.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 5.33 76.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.031 α = 90 b = 136.031 β = 90 c = 357.626 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD ADSC QUANTUM 4 2002-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 30 0.072 12.7 7.6 55075 53588
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 96.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ERT 2.7 27.95 50743 45583 5160 94.85 0.20788 0.20477 0.2085 0.23561 0.2395 RANDOM 45.993
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.36 0.72 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.642 r_mcangle_it 1.537 r_scangle_it 1.475 r_angle_refined_deg 1.339 r_mcbond_it 0.867 r_scbond_it 0.845 r_angle_other_deg 0.661 r_symmetry_vdw_other 0.368 r_symmetry_vdw_refined 0.306 r_nbd_other 0.267
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.642 r_mcangle_it 1.537 r_scangle_it 1.475 r_angle_refined_deg 1.339 r_mcbond_it 0.867 r_scbond_it 0.845 r_angle_other_deg 0.661 r_symmetry_vdw_other 0.368 r_symmetry_vdw_refined 0.306 r_nbd_other 0.267 r_nbd_refined 0.259 r_xyhbond_nbd_refined 0.244 r_symmetry_hbond_refined 0.12 r_nbtor_other 0.103 r_chiral_restr 0.069 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5636 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing