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Crystal Structure Analys of the Gamma-COPI Appendage domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 299 PEG 8000, Magnesium Acetate, Sodium Cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 299K
Crystal Properties Matthews coefficient Solvent content 2.63 52.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.8 α = 90 b = 74.1 β = 90 c = 99.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2001-06-15 M SINGLE WAVELENGTH 2 1 100 CCD 2002-06-15
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.9100 ESRF ID29 2 SYNCHROTRON SRS BEAMLINE PX14.2 0.9796 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 59 96.9 0.082 6.7 29073 19.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 96.3 0.281 6.7 4.9 3336
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 20 6.7 26664 26664 1426 96.74 0.17454 0.17274 0.1856 0.20806 0.2145 RANDOM 18.132
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.17 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.675 r_scangle_it 5.205 r_scbond_it 3.115 r_mcangle_it 1.966 r_angle_refined_deg 1.475 r_mcbond_it 1.015 r_angle_other_deg 0.846 r_nbd_other 0.257 r_symmetry_vdw_other 0.245 r_xyhbond_nbd_refined 0.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.675 r_scangle_it 5.205 r_scbond_it 3.115 r_mcangle_it 1.966 r_angle_refined_deg 1.475 r_mcbond_it 1.015 r_angle_other_deg 0.846 r_nbd_other 0.257 r_symmetry_vdw_other 0.245 r_xyhbond_nbd_refined 0.227 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.138 r_chiral_restr 0.089 r_nbtor_other 0.084 r_symmetry_vdw_refined 0.076 r_bond_refined_d 0.018 r_gen_planes_other 0.017 r_gen_planes_refined 0.009 r_xyhbond_nbd_other 0.006 r_bond_other_d 0.004 r_dihedral_angle_2_deg r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2176 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 1
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing REFMAC refinement CCP4 data scaling