X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.52980.1mM Tris-HCl, 2.5M ammonium sulfate, pH 8.5, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.8256.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.637α = 90
b = 117.937β = 108.92
c = 50.594γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVosmic mirrors2003-04-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8452.392.721337134132422

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.93023888238882207392.720.217450.217450.213360.25855RANDOM30.642
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.15-0.761.31-0.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg9.798
r_scangle_it5.756
r_scbond_it4.211
r_angle_refined_deg2.883
r_mcangle_it2.687
r_mcbond_it1.779
r_angle_other_deg1.353
r_symmetry_vdw_other0.29
r_symmetry_vdw_refined0.282
r_nbd_other0.274
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg9.798
r_scangle_it5.756
r_scbond_it4.211
r_angle_refined_deg2.883
r_mcangle_it2.687
r_mcbond_it1.779
r_angle_other_deg1.353
r_symmetry_vdw_other0.29
r_symmetry_vdw_refined0.282
r_nbd_other0.274
r_nbd_refined0.242
r_xyhbond_nbd_refined0.225
r_symmetry_hbond_refined0.222
r_chiral_restr0.202
r_nbtor_other0.103
r_bond_refined_d0.037
r_gen_planes_refined0.017
r_gen_planes_other0.012
r_bond_other_d0.003
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3533
Nucleic Acid Atoms
Solvent Atoms441
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
d*TREKdata scaling
MOLREPphasing