X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4293ammonium sulfate, sodium acetate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9536.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.323α = 90
b = 64.323β = 90
c = 32.607γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATERIGAKU RAXIS IICmirrorMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65098.50.115.82.165326532
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.66900.2712.41.7591

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1iro1.616.07652862233051000.152850.151120.18868RANDOM12.193
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.16-0.58-1.161.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.29
r_scangle_it2.84
r_scbond_it1.753
r_angle_refined_deg1.275
r_mcangle_it1.17
r_angle_other_deg0.774
r_mcbond_it0.627
r_symmetry_vdw_refined0.247
r_nbd_other0.232
r_symmetry_vdw_other0.222
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.29
r_scangle_it2.84
r_scbond_it1.753
r_angle_refined_deg1.275
r_mcangle_it1.17
r_angle_other_deg0.774
r_mcbond_it0.627
r_symmetry_vdw_refined0.247
r_nbd_other0.232
r_symmetry_vdw_other0.222
r_nbd_refined0.207
r_symmetry_hbond_refined0.126
r_xyhbond_nbd_refined0.109
r_chiral_restr0.089
r_nbtor_other0.089
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms422
Nucleic Acid Atoms
Solvent Atoms52
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling