☰ Navigation Tabs
Solution structure of Antheraea polyphemus pheromone binding protein (ApolPBP)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 1mM ApolPBP U-15N,13C; 50mM phosphate buffer; 1mM EDTA; 0.1% NaN3; 95% H2O; 5% D2O 95% H2O/5% D2O 50mM phosphate 6.33 ambient 308 2 3D_13C-separated_NOESY 1mM ApolPBP U-15N,13C; 50mM phosphate buffer; 1mM EDTA; 0.1% NaN3; 95% H2O; 5% D2O 95% H2O/5% D2O 50mM phosphate 6.33 ambient 308
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 800 2 Bruker DMX 600 3 Bruker DMX 500
NMR Refinement Method Details Software torsion angle dynamics simulated annealing, thin layer water refinement 2501 NOE-derived distance constraints, 243 dihedral angle restraints, 120 distance restraints from hydrogen bonds NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 3 (closest to the average)
Additional NMR Experimental Information Details mixing time 110ms for 13C separated NOESY, 120ms for 15N separated NOESY
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 2.1 Delaglio F., Grzesiek S., Vuister G.W., Zhu G., Pfizer J., Bax A. 2 data analysis NMRView 5.0.4 Johnson B.A., Blevins R.A. 3 structure solution CYANA 1.0.6 Guntert P., Mumenthaler C., Wuthrich K. 4 refinement ARIA 1.2 Linge J.P., Habeck M., Rieping W., Nilges M.