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yeast 5-aminolaevulinic acid dehydratase Lead (Pb) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AW5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 AS FOR PDB ENTRY 1AW5 WITH 1MM LEAD ACETATE, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.96 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.4 α = 90 b = 102.4 β = 90 c = 170.5 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1995-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 14.6 93 0.098 5.2 6.1 14956 51.01
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 37.6 0.243 3 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1AW5 2.5 14.6 3 13008 644 93 0.252 0.379 RANDOM 30.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_singtor_nbd 0.026 p_angle_d 0.019 p_planar_d 0.012 p_plane_restr 0.011 p_chiral_restr 0.01 p_bond_d 0.006 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it
RMS Deviations Key Refinement Restraint Deviation p_singtor_nbd 0.026 p_angle_d 0.019 p_planar_d 0.012 p_plane_restr 0.011 p_chiral_restr 0.01 p_bond_d 0.006 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2546 Nucleic Acid Atoms Solvent Atoms 370 Heterogen Atoms 2
Software Software Software Name Purpose CCP4 refinement MOSFLM data reduction Agrovata data scaling SCALA data scaling CCP4 phasing