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BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH A REACTION INTERMEDIATE.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AFW PDB ENTRY 1AFW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 1 M LITHIUM SULPHATE, 0.9 M AMMONIUM SULPHATE, 0.1 M SODIUM ACETATE PH 5.0
A REACTION INTERMEDIATE WAS TRAPPED BY FLASH-FREEZING THE
CRYSTAL AFTER A SHORT SOAK WITH ACETOACETYL-COA SUBSTRATE.
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.459 α = 90 b = 78.864 β = 93.43 c = 149.745 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR MARRESEARCH TOROIDAL MIRROR 1998-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 50 93 8.4 7 4.4 130872 24.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.03 2.15 77 13 5 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AFW 1.92 50 127433 6438 85.5 0.209 0.2354 0.256 0.2401 RANDOM 39.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 35.5 p_staggered_tor 18.4 p_special_tor 15 p_scangle_it 6.595 p_scbond_it 5.819 p_mcangle_it 4.063 p_mcbond_it 3.314 p_planar_tor 2.6 p_multtor_nbd 0.263 p_chiral_restr 0.205
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 35.5 p_staggered_tor 18.4 p_special_tor 15 p_scangle_it 6.595 p_scbond_it 5.819 p_mcangle_it 4.063 p_mcbond_it 3.314 p_planar_tor 2.6 p_multtor_nbd 0.263 p_chiral_restr 0.205 p_xyhbond_nbd 0.197 p_singtor_nbd 0.184 p_planar_d 0.046 p_angle_d 0.041 p_bond_d 0.018 p_plane_restr 0.0173 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11264 Nucleic Acid Atoms Solvent Atoms 718 Heterogen Atoms 222
Software Software Software Name Purpose AMoRE phasing REFMAC refinement XDS data reduction CCP4 data scaling