☰ Navigation Tabs
Structure of E.coli RusA Holliday junction resolvase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 290 PEG 4000, sodium acetate, Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 1.99 38.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.352 α = 90 b = 50.052 β = 101.42 c = 49.597 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 tungsten carbide primary slits, Si crystal monochromator, tungsten carbide
secondary slits, toroidal zerodur mirror 2001-04-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97943 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.899 50 97 0.028 0.036 12.25 3.7 17267 17267 26.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.899 1.95 97 0.1028 0.151 8.58 3.6 1258
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.899 48.8 17267 16398 868 99.48 0.231 0.19199 0.19011 0.1969 0.22622 0.2339 RANDOM 18.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.33 0.01 -0.99 3.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.426 r_scangle_it 5.267 r_scbond_it 3.462 r_mcangle_it 2.718 r_mcbond_it 1.542 r_angle_refined_deg 1.456 r_angle_other_deg 0.742 r_symmetry_vdw_other 0.283 r_nbd_other 0.269 r_nbd_refined 0.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.426 r_scangle_it 5.267 r_scbond_it 3.462 r_mcangle_it 2.718 r_mcbond_it 1.542 r_angle_refined_deg 1.456 r_angle_other_deg 0.742 r_symmetry_vdw_other 0.283 r_nbd_other 0.269 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_refined 0.205 r_symmetry_hbond_refined 0.176 r_nbtor_other 0.093 r_chiral_restr 0.089 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1757 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing REFMAC refinement